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A refined analysis of Neanderthal-introgressed sequences in modern humans with a complete reference genome
Liang, SA., Ren, T., Zhang, J. et al
2
Archaic data based on GRCh38 and T2T-CHM13 [Data set].
Shen-Ao Liang†, Tianxin Ren†, Jiayu Zhang†, Jiahui He, Xuankai Wang, Xinrui Jiang, Yuan He, Rajiv McCoy, Qiaomei Fu, Joshua M. Akey, Yafei Mao*, Lu Chen*
Please ensure to provide proper citation if you use the related conclusions or data in your work.
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TITLE
AUTHORS
Journal
1
The Contribution of Neanderthals to Phenotypic Variation in Modern Humans
Dannemann M, Kelso J
2
Archaic Hominin Admixture Facilitated Adaptation to Out-of-Africa Environments
Gittelman RM, Schraiber JG, Vernot B, Mikacenic C, Wurfel MM, Akey JM
3
Archaic Adaptive Introgression in TBX15/WARS2
Racimo F, Gokhman D, Fumagalli M, Ko A, Hansen T, Moltke I, Albrechtsen A, Carmel L, Huerta-Sanchez E, Nielsen R
4
The phenotypic legacy of admixture between modern humans and Neandertals
Simonti CN, Vernot B, Bastarache L, Bottinger E, Carrell DS, Chisholm RL, Crosslin DR, Hebbring SJ, Jarvik GP, Kullo IJ, et al
5
A draft sequence of the Neandertal genome
Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, et al
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The complete genome sequence of a Neanderthal from the Altai Mountains
Prufer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, et al
7
A high-coverage Neandertal genome from Vindija Cave in Croatia
Prufer K, de Filippo C, Grote S, Mafessoni F, Korlevic P, Hajdinjak M, Vernot B, Skov L, Hsieh P, Peyregne S, et al
8
A high-coverage Neandertal genome from Chagyrskaya Cave
Mafessoni F, Grote S, de Filippo C, Slon V, Kolobova KA, Viola B, Markin SV, Chintalapati M, Peyregne S, Skov L, et al
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Genetic history of an archaic hominin group from Denisova Cave in Siberia
Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PL, et al
10
A high-coverage genome sequence from an archaic Denisovan individual
Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prufer K, de Filippo C, et al
11
The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans
Sankararaman S, Mallick S, Patterson N, Reich D
12
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
Vernot B, Tucci S, Kelso J, Schraiber JG, Wolf AB, Gittelman RM, Dannemann M, Grote S, McCoy RC, Norton H, et al
13
Higher Levels of Neanderthal Ancestry in East Asians than in Europeans
Wall JD, Yang MA, Jay F, Kim SK, Durand EY, Stevison LS, Gignoux C, Woerner A, Hammer MF, Slatkin M
14
Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture
Browning SR, Browning BL, Zhou Y, Tucci S, Akey JM
15
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, et al
16
Identifying and Interpreting Apparent Neanderthal Ancestry in African Individuals
Chen L, Wolf AB, Fu W, Li L, Akey JM
17
The genomic landscape of Neanderthal ancestry in present-day humans
Sankararaman S, Mallick S, Dannemann M, Prufer K, Kelso J, Paabo S, Patterson N, Reich D
18
Resurrecting surviving Neandertal lineages from modern human genomes
Vernot B, Akey JM
19
Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA
Huerta-Sanchez E, Jin X, Asan, Bianba Z, Peter BM, Vinckenbosch N, Liang Y, Yi X, He M, Somel M, et al
20
High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios
Byrska-Bishop M, Evani US, Zhao X, Basile AO, Abel HJ, Regier AA, Corvelo A, Clarke WE, Musunuri R, Nagulapalli K, et al
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Detecting archaic introgression using an unadmixed outgroup
Skov L, Hui R, Shchur V, Hobolth A, Scally A, Schierup MH, Durbin R
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The complete sequence of a human genome
Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, et al
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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Schneider VA, Graves-Lindsay T, Howe K, Bouk N, Chen HC, Kitts PA, Murphy TD, Pruitt KD, Thibaud-Nissen F, Albracht D, et al
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A complete reference genome improves analysis of human genetic variation
Aganezov S, Yan SM, Soto DC, Kirsche M, Zarate S, Avdeyev P, Taylor DJ, Shafin K, Shumate A, Xiao C, et al
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Complete genomic and epigenetic maps of human centromeres
Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, Hoyt SJ, Uralsky L, Ryabov FD, Shew CJ, et al
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Epigenetic patterns in a complete human genome
Gershman A, Sauria MEG, Guitart X, Vollger MR, Hook PW, Hoyt SJ, Jain M, Shumate A, Razaghi R, Koren S, et al
27
From telomere to telomere: The transcriptional and epigenetic state of human repeat elements
Hoyt SJ, Storer JM, Hartley GA, Grady PGS, Gershman A, de Lima LG, Limouse C, Halabian R, Wojenski L, Rodriguez M, et al
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Segmental duplications and their variation in a complete human genome
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